IL_6VWM_097

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_097 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.1344

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6VWM|1|2|U|1004
6VWM|1|2|C|1005
6VWM|1|2|C|1006
6VWM|1|2|C|1007
6VWM|1|2|A|1008
6VWM|1|2|A|1009
6VWM|1|2|A|1010
6VWM|1|2|G|1011
*
6VWM|1|2|C|1150
6VWM|1|2|A|1151

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20