IL_6VWM_105

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6VWM|1|2|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_105 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1502

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6VWM|1|2|C|1208
6VWM|1|2|U|1209
6VWM|1|2|G|1210
6VWM|1|2|C|1211
6VWM|1|2|G|1212
6VWM|1|2|A|1213
6VWM|1|2|A|1214
6VWM|1|2|G|1215
*
6VWM|1|2|U|1234
6VWM|1|2|G|1235
6VWM|1|2|G|1236
6VWM|1|2|A|1237
6VWM|1|2|G|1238

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20