IL_6VWM_117

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_117 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1838

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6VWM|1|2|U|1474
6VWM|1|2|G|1475
6VWM|1|2|U|1476
6VWM|1|2|A|1477
6VWM|1|2|G|1478
*
6VWM|1|2|U|1513
6VWM|1|2|G|1514
6VWM|1|2|A|1515
6VWM|1|2|G|1516
6VWM|1|2|G|1517

Current chains

Chain 2

23S ribosomal RNA

Nearby chains