IL_6VWM_120

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_120 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2936

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6VWM|1|2|C|1526
6VWM|1|2|G|1527
6VWM|1|2|A|1528
6VWM|1|2|G|1529
6VWM|1|2|G|1530
*
6VWM|1|2|C|1541
6VWM|1|2|U|1542
6VWM|1|2|G|1543
6VWM|1|2|A|1544
6VWM|1|2|A|1545
6VWM|1|2|G|1546

Current chains

Chain 2

23S ribosomal RNA

Nearby chains