IL_6VWM_124

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6VWM|1|2|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_124 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1769

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6VWM|1|2|A|1669
6VWM|1|2|C|1670
6VWM|1|2|U|1671
6VWM|1|2|A|1672
6VWM|1|2|G|1673
6VWM|1|2|G|1674
*
6VWM|1|2|C|1990
6VWM|1|2|U|1991
6VWM|1|2|G|1992
6VWM|1|2|U|1993

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L14