IL_6VWM_128

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6VWM|1|2|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_128 not in the Motif Atlas

Homologous match to IL_5J7L_311

Geometric discrepancy: 0.4108

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6VWM|1|2|C|1727
6VWM|1|2|C|1728
*
6VWM|1|2|G|1731
6VWM|1|2|C|1732
6VWM|1|2|G|1733

Current chains

Chain 2

23S ribosomal RNA

Nearby chains