IL_6VWM_130

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6VWM|1|2|A|1801, 6VWM|1|2|C|1816, 6VWM|1|2|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_130 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1027

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6VWM|1|2|U|1798
6VWM|1|2|G|1799
6VWM|1|2|C|1800
6VWM|1|2|A|1801
6VWM|1|2|A|1802
6VWM|1|2|A|1803
6VWM|1|2|C|1804
*
6VWM|1|2|G|1813
6VWM|1|2|G|1814
6VWM|1|2|A|1815
6VWM|1|2|C|1816
6VWM|1|2|G|1817
6VWM|1|2|U|1818
6VWM|1|2|A|1819
6VWM|1|2|U|1820
6VWM|1|2|A|1821

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2