IL_6VWM_161

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_161 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.119

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6VWM|1|2|C|2652
6VWM|1|2|U|2653
6VWM|1|2|A|2654
6VWM|1|2|G|2655
6VWM|1|2|U|2656
6VWM|1|2|A|2657
6VWM|1|2|C|2658
*
6VWM|1|2|G|2663
6VWM|1|2|G|2664
6VWM|1|2|A|2665
6VWM|1|2|C|2666
6VWM|1|2|C|2667
6VWM|1|2|G|2668

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6