IL_6VWM_165

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

6VWM|1|2|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_165 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1359

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6VWM|1|2|G|2737
6VWM|1|2|A|2738
6VWM|1|2|U|2739
6VWM|1|2|A|2740
6VWM|1|2|A|2741
6VWM|1|2|G|2742
*
6VWM|1|2|C|2762
6VWM|1|2|G|2763
6VWM|1|2|A|2764
6VWM|1|2|A|2765
6VWM|1|2|A|2766
6VWM|1|2|C|2767

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L13