IL_6VWN_003
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUAAC*GGG
- Length
- 9 nucleotides
- Bulged bases
- 6VWN|1|1|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_003 not in the Motif Atlas
- Geometric match to IL_2O3X_003
- Geometric discrepancy: 0.1928
- The information below is about IL_2O3X_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6VWN|1|1|C|47
6VWN|1|1|C|48
6VWN|1|1|U|49
6VWN|1|1|A|50
6VWN|1|1|A|51
6VWN|1|1|C|52
*
6VWN|1|1|G|359
6VWN|1|1|G|360
6VWN|1|1|G|361
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain k
- 30S ribosomal protein S12
Coloring options: