3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAUAACU*AGCUAAUAC
Length
17 nucleotides
Bulged bases
6VWN|1|1|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VWN|1|1|G|147
6VWN|1|1|G|148
6VWN|1|1|A|149
6VWN|1|1|U|150
6VWN|1|1|A|151
6VWN|1|1|A|152
6VWN|1|1|C|153
6VWN|1|1|U|154
*
6VWN|1|1|A|167
6VWN|1|1|G|168
6VWN|1|1|C|169
6VWN|1|1|U|170
6VWN|1|1|A|171
6VWN|1|1|A|172
6VWN|1|1|U|173
6VWN|1|1|A|174
6VWN|1|1|C|175

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain s
30S ribosomal protein S20

Coloring options:

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