IL_6VWN_017

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

6VWN|1|1|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_017 not in the Motif Atlas

Geometric match to IL_4V9F_074

Geometric discrepancy: 0.2123

The information below is about IL_4V9F_074

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6VWN|1|1|U|367
6VWN|1|1|U|368
6VWN|1|1|G|369
*
6VWN|1|1|C|392
6VWN|1|1|A|393

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S16