IL_6VWN_028
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGCAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_028 not in the Motif Atlas
- Homologous match to IL_5J7L_027
- Geometric discrepancy: 0.1631
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6VWN|1|1|C|580
6VWN|1|1|G|581
6VWN|1|1|C|582
6VWN|1|1|A|583
6VWN|1|1|G|584
*
6VWN|1|1|U|757
6VWN|1|1|C|758
6VWN|1|1|A|759
6VWN|1|1|G|760
6VWN|1|1|G|761
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 30S ribosomal protein S8
- Chain k
- 30S ribosomal protein S12
- Chain n
- 30S ribosomal protein S15
- Chain p
- 30S ribosomal protein S17
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