IL_6VWN_040
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAC*GUAC
- Length
- 7 nucleotides
- Bulged bases
- 6VWN|1|1|A|1394
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_040 not in the Motif Atlas
- Geometric match to IL_4V9F_097
- Geometric discrepancy: 0.1935
- The information below is about IL_4V9F_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6VWN|1|1|G|922
6VWN|1|1|A|923
6VWN|1|1|C|924
*
6VWN|1|1|G|1392
6VWN|1|1|U|1393
6VWN|1|1|A|1394
6VWN|1|1|C|1395
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S5
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