IL_6VWN_053

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_053 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.243

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6VWN|1|1|C|1158
6VWN|1|1|U|1159
6VWN|1|1|G|1160
6VWN|1|1|C|1161
*
6VWN|1|1|G|1175
6VWN|1|1|A|1176
6VWN|1|1|G|1177
6VWN|1|1|G|1178
6VWN|1|1|A|1179
6VWN|1|1|A|1180
6VWN|1|1|G|1181

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain a

30S ribosomal protein S2

Chain h

30S ribosomal protein S9