IL_6VWN_065

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAC*GAG

Length

7 nucleotides

Bulged bases

6VWN|1|1|A|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_065 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3239

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6VWN|1|1|U|1445
6VWN|1|1|A|1446
6VWN|1|1|A|1447
6VWN|1|1|C|1448
*
6VWN|1|1|G|1455
6VWN|1|1|A|1456
6VWN|1|1|G|1457

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S20