IL_6VWN_082

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6VWN|1|2|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_082 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.084

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6VWN|1|2|G|697
6VWN|1|2|C|698
*
6VWN|1|2|G|763
6VWN|1|2|A|764
6VWN|1|2|C|765

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2