3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6VWN|1|2|A|1127, 6VWN|1|2|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWN_101 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0938
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6VWN|1|2|G|1024
6VWN|1|2|G|1025
6VWN|1|2|G|1026
6VWN|1|2|A|1027
6VWN|1|2|A|1028
6VWN|1|2|A|1029
6VWN|1|2|C|1030
*
6VWN|1|2|G|1124
6VWN|1|2|G|1125
6VWN|1|2|A|1126
6VWN|1|2|A|1127
6VWN|1|2|G|1128
6VWN|1|2|A|1129
6VWN|1|2|U|1130
6VWN|1|2|G|1131
6VWN|1|2|U|1132
6VWN|1|2|A|1133
6VWN|1|2|A|1134
6VWN|1|2|C|1135
6VWN|1|2|G|1136
6VWN|1|2|G|1137
6VWN|1|2|G|1138
6VWN|1|2|G|1139
6VWN|1|2|C|1140

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain AC
50S ribosomal protein L36
Chain B
50S ribosomal protein L3
Chain G
50S ribosomal protein L13
Chain K
50S ribosomal protein L16

Coloring options:


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