IL_6VWN_107

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_107 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0945

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6VWN|1|2|A|1262
6VWN|1|2|U|1263
6VWN|1|2|A|1264
6VWN|1|2|A|1265
6VWN|1|2|G|1266
6VWN|1|2|U|1267
6VWN|1|2|A|1268
6VWN|1|2|A|1269
*
6VWN|1|2|U|2011
6VWN|1|2|G|2012
6VWN|1|2|A|2013
6VWN|1|2|A|2014
6VWN|1|2|A|2015
6VWN|1|2|U|2016
6VWN|1|2|U|2017

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32