IL_6VWN_120
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 6VWN|1|2|A|1490
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_120 not in the Motif Atlas
- Geometric match to IL_4V9F_064
- Geometric discrepancy: 0.304
- The information below is about IL_4V9F_064
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
6VWN|1|2|C|1489
6VWN|1|2|A|1490
6VWN|1|2|G|1491
*
6VWN|1|2|C|1499
6VWN|1|2|G|1500
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
Coloring options: