IL_6VWN_126

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6VWN|1|2|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_126 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1016

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6VWN|1|2|C|1686
6VWN|1|2|G|1687
6VWN|1|2|U|1688
6VWN|1|2|A|1689
6VWN|1|2|A|1690
6VWN|1|2|C|1691
*
6VWN|1|2|G|1696
6VWN|1|2|G|1697
6VWN|1|2|A|1698
6VWN|1|2|G|1699
6VWN|1|2|A|1700
6VWN|1|2|A|1701
6VWN|1|2|G|1702

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2