IL_6VWN_130

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

6VWN|1|2|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_130 not in the Motif Atlas

Homologous match to IL_5J7L_312

Geometric discrepancy: 0.1242

The information below is about IL_5J7L_312

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6VWN|1|2|G|1770
6VWN|1|2|C|1771
*
6VWN|1|2|G|1980
6VWN|1|2|A|1981
6VWN|1|2|U|1982

Current chains

Chain 2

23S ribosomal RNA

Nearby chains