IL_6VWN_137

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6VWN|1|2|A|1938, 6VWN|1|2|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_137 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1743

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

6VWN|1|2|C|1934
6VWN|1|2|G|1935
6VWN|1|2|A|1936
6VWN|1|2|A|1937
6VWN|1|2|A|1938
6VWN|1|2|U|1939
6VWN|1|2|U|1940
6VWN|1|2|C|1941
6VWN|1|2|C|1942
6VWN|1|2|U|1943
6VWN|1|2|U|1944
6VWN|1|2|G|1945
*
6VWN|1|2|C|1961
6VWN|1|2|C|1962
6VWN|1|2|U|1963
6VWN|1|2|G|1964

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2