IL_6VWN_139

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6VWN|1|2|C|2055, 6VWN|1|2|U|2613, 6VWN|1|2|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_139 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1198

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6VWN|1|2|A|2054
6VWN|1|2|C|2055
6VWN|1|2|G|2056
*
6VWN|1|2|C|2612
6VWN|1|2|U|2613
6VWN|1|2|A|2614
6VWN|1|2|U|2615

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32