IL_6VWN_140

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6VWN|1|2|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_140 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.0516

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6VWN|1|2|G|2067
6VWN|1|2|U|2068
6VWN|1|2|G|2069
*
6VWN|1|2|C|2442
6VWN|1|2|C|2443

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15