3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AUGUGUAGGAUAGGU*ACCCUU
Length
21 nucleotides
Bulged bases
6VWN|1|2|U|2111, 6VWN|1|2|U|2118
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VWN|1|2|A|2108
6VWN|1|2|U|2109
6VWN|1|2|G|2110
6VWN|1|2|U|2111
6VWN|1|2|G|2112
6VWN|1|2|U|2113
6VWN|1|2|A|2114
6VWN|1|2|G|2115
6VWN|1|2|G|2116
6VWN|1|2|A|2117
6VWN|1|2|U|2118
6VWN|1|2|A|2119
6VWN|1|2|G|2120
6VWN|1|2|G|2121
6VWN|1|2|U|2122
*
6VWN|1|2|A|2176
6VWN|1|2|C|2177
6VWN|1|2|C|2178
6VWN|1|2|C|2179
6VWN|1|2|U|2180
6VWN|1|2|U|2181

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3858 s
Application loaded.