IL_6VWN_146

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

6VWN|1|2|A|2126, 6VWN|1|2|A|2170, 6VWN|1|2|A|2171, 6VWN|1|2|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWN|1|2|G|2124
6VWN|1|2|G|2125
6VWN|1|2|A|2126
6VWN|1|2|G|2127
*
6VWN|1|2|C|2161
6VWN|1|2|G|2162
6VWN|1|2|A|2163
6VWN|1|2|C|2164
6VWN|1|2|C|2165
6VWN|1|2|U|2166
6VWN|1|2|U|2167
6VWN|1|2|G|2168
6VWN|1|2|A|2169
6VWN|1|2|A|2170
6VWN|1|2|A|2171
6VWN|1|2|U|2172
6VWN|1|2|A|2173
6VWN|1|2|C|2174

Current chains

Chain 2

23S ribosomal RNA

Nearby chains