IL_6VWN_158

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6VWN|1|2|A|2572, 6VWN|1|2|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_158 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.111

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6VWN|1|2|C|2512
6VWN|1|2|A|2513
*
6VWN|1|2|U|2571
6VWN|1|2|A|2572
6VWN|1|2|C|2573
6VWN|1|2|G|2574

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3