IL_6VWN_178

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6VWN|1|1|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_178 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.1765

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6VWN|1|1|G|922
6VWN|1|1|A|923
*
6VWN|1|1|U|1393
6VWN|1|1|A|1394
6VWN|1|1|C|1395

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S5