3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGAAGG*UCUAAG
Length
12 nucleotides
Bulged bases
6VWN|1|2|A|1420
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWN_183 not in the Motif Atlas
Homologous match to IL_7A0S_108
Geometric discrepancy: 0.5656
The information below is about IL_7A0S_108
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6VWN|1|2|C|1417
6VWN|1|2|G|1418
6VWN|1|2|A|1419
6VWN|1|2|A|1420
6VWN|1|2|G|1421
6VWN|1|2|G|1422
*
6VWN|1|2|U|1576
6VWN|1|2|C|1577
6VWN|1|2|U|1578
6VWN|1|2|A|1579
6VWN|1|2|A|1580
6VWN|1|2|G|1581

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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