IL_6VWN_183
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAGG*UCUAAG
- Length
- 12 nucleotides
- Bulged bases
- 6VWN|1|2|A|1420
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_183 not in the Motif Atlas
- Homologous match to IL_7A0S_108
- Geometric discrepancy: 0.5656
- The information below is about IL_7A0S_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6VWN|1|2|C|1417
6VWN|1|2|G|1418
6VWN|1|2|A|1419
6VWN|1|2|A|1420
6VWN|1|2|G|1421
6VWN|1|2|G|1422
*
6VWN|1|2|U|1576
6VWN|1|2|C|1577
6VWN|1|2|U|1578
6VWN|1|2|A|1579
6VWN|1|2|A|1580
6VWN|1|2|G|1581
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: