3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UGG*UCAAG
Length
8 nucleotides
Bulged bases
6VWN|1|2|A|1508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VWN|1|2|U|1481
6VWN|1|2|G|1482
6VWN|1|2|G|1483
*
6VWN|1|2|U|1506
6VWN|1|2|C|1507
6VWN|1|2|A|1508
6VWN|1|2|A|1509
6VWN|1|2|G|1510

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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