IL_6VWN_187

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

6VWN|1|2|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_187 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1273

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6VWN|1|2|G|1666
6VWN|1|2|G|1667
6VWN|1|2|A|1668
6VWN|1|2|A|1669
6VWN|1|2|C|1670
6VWN|1|2|U|1671
6VWN|1|2|A|1672
6VWN|1|2|G|1673
6VWN|1|2|G|1674
*
6VWN|1|2|C|1990
6VWN|1|2|U|1991
6VWN|1|2|G|1992
6VWN|1|2|U|1993
6VWN|1|2|C|1994

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L14