IL_6VWN_191

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGCCU*AUGUUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWN|1|2|G|2100
6VWN|1|2|A|2101
6VWN|1|2|G|2102
6VWN|1|2|C|2103
6VWN|1|2|C|2104
6VWN|1|2|U|2105
*
6VWN|1|2|A|2184
6VWN|1|2|U|2185
6VWN|1|2|G|2186
6VWN|1|2|U|2187
6VWN|1|2|U|2188
6VWN|1|2|U|2189

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L9