IL_6VYQ_012
3D structure
- PDB id
- 6VYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6VYQ|1|D|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYQ_012 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.134
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6VYQ|1|D|G|147
6VYQ|1|D|G|148
6VYQ|1|D|A|149
6VYQ|1|D|U|150
6VYQ|1|D|A|151
6VYQ|1|D|A|152
6VYQ|1|D|C|153
*
6VYQ|1|D|G|168
6VYQ|1|D|C|169
6VYQ|1|D|U|170
6VYQ|1|D|A|171
6VYQ|1|D|A|172
6VYQ|1|D|U|173
6VYQ|1|D|A|174
6VYQ|1|D|C|175
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
Coloring options: