IL_6VYQ_023

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6VYQ|1|D|G|450
6VYQ|1|D|A|451
6VYQ|1|D|A|452
6VYQ|1|D|G|453
6VYQ|1|D|G|454
6VYQ|1|D|G|455
*
6VYQ|1|D|C|477
6VYQ|1|D|A|478
6VYQ|1|D|U|479
6VYQ|1|D|U|480
6VYQ|1|D|G|481
6VYQ|1|D|A|482
6VYQ|1|D|C|483

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16