IL_6VYQ_033

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

6VYQ|1|D|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_033 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.065

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6VYQ|1|D|U|662
6VYQ|1|D|A|663
6VYQ|1|D|G|664
6VYQ|1|D|A|665
6VYQ|1|D|G|666
*
6VYQ|1|D|U|740
6VYQ|1|D|G|741
6VYQ|1|D|G|742
6VYQ|1|D|A|743

Current chains

Chain D

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S18

Chain L

30S ribosomal protein S6

Chain T

30S ribosomal protein S15