IL_6VYQ_056

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

6VYQ|1|D|A|1257, 6VYQ|1|D|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_056 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1258

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6VYQ|1|D|G|1255
6VYQ|1|D|A|1256
6VYQ|1|D|A|1257
6VYQ|1|D|G|1258
*
6VYQ|1|D|C|1277
6VYQ|1|D|G|1278
6VYQ|1|D|G|1279
6VYQ|1|D|A|1280
6VYQ|1|D|C|1281
6VYQ|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14