IL_6VYQ_107
3D structure
- PDB id
- 6VYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6VYQ|1|a|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYQ_107 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.166
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6VYQ|1|a|C|1043
6VYQ|1|a|C|1044
6VYQ|1|a|C|1045
6VYQ|1|a|A|1046
6VYQ|1|a|G|1047
6VYQ|1|a|A|1048
6VYQ|1|a|C|1049
6VYQ|1|a|A|1050
6VYQ|1|a|G|1051
*
6VYQ|1|a|U|1108
6VYQ|1|a|C|1109
6VYQ|1|a|G|1110
6VYQ|1|a|A|1111
6VYQ|1|a|G|1112
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L10
- Chain p
- 50S ribosomal protein L6
- Chain q
- 50S ribosomal protein L36
Coloring options: