IL_6VYR_025
3D structure
- PDB id
- 6VYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGCCAG*CGGUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6VYR|1|D|A|532, 6VYR|1|D|U|534, 6VYR|1|D|A|535
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYR_025 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.0768
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VYR|1|D|G|515
6VYR|1|D|G|517
6VYR|1|D|C|518
6VYR|1|D|C|519
6VYR|1|D|A|520
6VYR|1|D|G|521
*
6VYR|1|D|C|528
6VYR|1|D|G|529
6VYR|1|D|G|530
6VYR|1|D|U|531
6VYR|1|D|A|532
6VYR|1|D|A|533
6VYR|1|D|U|534
6VYR|1|D|A|535
6VYR|1|D|C|536
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 18 nt long spacer
- Chain I
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S4
- Chain R
- 30S ribosomal protein S12
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