IL_6VYR_085

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYR_085 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0916

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6VYR|1|a|U|703
6VYR|1|a|G|704
6VYR|1|a|A|705
6VYR|1|a|A|706
6VYR|1|a|G|707
*
6VYR|1|a|U|724
6VYR|1|a|G|725
6VYR|1|a|G|726
6VYR|1|a|A|727
6VYR|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2