IL_6VYR_089
3D structure
- PDB id
- 6VYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6VYR|1|a|G|776, 6VYR|1|a|A|788, 6VYR|1|a|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYR_089 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.0631
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6VYR|1|a|G|775
6VYR|1|a|G|776
6VYR|1|a|G|777
*
6VYR|1|a|C|787
6VYR|1|a|A|788
6VYR|1|a|A|789
6VYR|1|a|U|790
6VYR|1|a|C|791
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain h
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L34
Coloring options: