IL_6VYS_012

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6VYS|1|D|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYS_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.134

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6VYS|1|D|G|147
6VYS|1|D|G|148
6VYS|1|D|A|149
6VYS|1|D|U|150
6VYS|1|D|A|151
6VYS|1|D|A|152
6VYS|1|D|C|153
*
6VYS|1|D|G|168
6VYS|1|D|C|169
6VYS|1|D|U|170
6VYS|1|D|A|171
6VYS|1|D|A|172
6VYS|1|D|U|173
6VYS|1|D|A|174
6VYS|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20