IL_6VYS_020

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYS_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2156

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VYS|1|D|U|409
6VYS|1|D|G|410
6VYS|1|D|A|411
6VYS|1|D|A|412
6VYS|1|D|G|413
6VYS|1|D|A|414
6VYS|1|D|A|415
6VYS|1|D|G|416
*
6VYS|1|D|U|427
6VYS|1|D|G|428
6VYS|1|D|U|429
6VYS|1|D|A|430
6VYS|1|D|A|431
6VYS|1|D|A|432
6VYS|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4