IL_6VYT_045

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VYT|1|D|U|1025, 6VYT|1|D|U|1030, 6VYT|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYT|1|D|G|1003
6VYT|1|D|A|1004
6VYT|1|D|A|1005
6VYT|1|D|G|1006
*
6VYT|1|D|U|1023
6VYT|1|D|G|1024
6VYT|1|D|U|1025
6VYT|1|D|G|1026
6VYT|1|D|C|1027
6VYT|1|D|C|1028
6VYT|1|D|U|1029
6VYT|1|D|U|1030
6VYT|1|D|C|1031
6VYT|1|D|G|1032
6VYT|1|D|G|1033
6VYT|1|D|G|1034
6VYT|1|D|A|1035
6VYT|1|D|A|1036
6VYT|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14