IL_6VYT_078
3D structure
- PDB id
- 6VYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14 Å
Loop
- Sequence
- GGAG*UGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYT_078 not in the Motif Atlas
- Homologous match to IL_5J7L_256
- Geometric discrepancy: 0.0502
- The information below is about IL_5J7L_256
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6VYT|1|a|G|536
6VYT|1|a|G|537
6VYT|1|a|A|538
6VYT|1|a|G|539
*
6VYT|1|a|U|554
6VYT|1|a|G|555
6VYT|1|a|A|556
6VYT|1|a|C|557
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L13
- Chain z
- 50S ribosomal protein L20
Coloring options: