IL_6VYT_151

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6VYT|1|a|G|2238

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYT_151 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0796

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6VYT|1|a|U|2081
6VYT|1|a|A|2082
6VYT|1|a|G|2083
*
6VYT|1|a|U|2236
6VYT|1|a|G|2237
6VYT|1|a|G|2238
6VYT|1|a|G|2239

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain h

50S ribosomal protein L2