IL_6VYU_011
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GGG*CGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYU_011 not in the Motif Atlas
- Homologous match to IL_5J7L_011
- Geometric discrepancy: 0.1242
- The information below is about IL_5J7L_011
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
6VYU|1|D|G|144
6VYU|1|D|G|145
6VYU|1|D|G|146
*
6VYU|1|D|C|176
6VYU|1|D|G|177
6VYU|1|D|C|178
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
Coloring options: