IL_6VYU_039

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6VYU|1|D|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_039 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.0636

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6VYU|1|D|G|922
6VYU|1|D|A|923
*
6VYU|1|D|U|1393
6VYU|1|D|A|1394
6VYU|1|D|C|1395

Current chains

Chain D

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S5