IL_6VYU_045

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VYU|1|D|U|1025, 6VYU|1|D|U|1030, 6VYU|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYU|1|D|G|1003
6VYU|1|D|A|1004
6VYU|1|D|A|1005
6VYU|1|D|G|1006
*
6VYU|1|D|U|1023
6VYU|1|D|G|1024
6VYU|1|D|U|1025
6VYU|1|D|G|1026
6VYU|1|D|C|1027
6VYU|1|D|C|1028
6VYU|1|D|U|1029
6VYU|1|D|U|1030
6VYU|1|D|C|1031
6VYU|1|D|G|1032
6VYU|1|D|G|1033
6VYU|1|D|G|1034
6VYU|1|D|A|1035
6VYU|1|D|A|1036
6VYU|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14