IL_6VYU_054
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- 6VYU|1|D|U|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYU_054 not in the Motif Atlas
- Homologous match to IL_5J7L_053
- Geometric discrepancy: 0.1238
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6VYU|1|D|C|1158
6VYU|1|D|U|1159
6VYU|1|D|G|1160
6VYU|1|D|C|1161
*
6VYU|1|D|G|1175
6VYU|1|D|A|1176
6VYU|1|D|G|1177
6VYU|1|D|G|1178
6VYU|1|D|A|1179
6VYU|1|D|A|1180
6VYU|1|D|G|1181
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain O
- 30S ribosomal protein S9
Coloring options: