3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
6VYU|1|D|U|1159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYU_054 not in the Motif Atlas
Homologous match to IL_5J7L_053
Geometric discrepancy: 0.1238
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6VYU|1|D|C|1158
6VYU|1|D|U|1159
6VYU|1|D|G|1160
6VYU|1|D|C|1161
*
6VYU|1|D|G|1175
6VYU|1|D|A|1176
6VYU|1|D|G|1177
6VYU|1|D|G|1178
6VYU|1|D|A|1179
6VYU|1|D|A|1180
6VYU|1|D|G|1181

Current chains

Chain D
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain O
30S ribosomal protein S9

Coloring options:


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